statalign.io.input
Class DataReader

java.lang.Object
  statalign.io.input.DataReader

Direct Known Subclasses:

CoorReader, FastaReader, NewickReader, PDBReader

public abstract class DataReader
extends java.lang.Object

Constructor Summary

DataReader()

Method Summary

DataType	read(java.io.File file)
abstract DataType	read(java.io.Reader reader)
DataType	read(java.lang.String fileName)
abstract java.util.List<java.lang.String>	supportedExtensions() DataReader plugins must override this to return a list of supported file extensions.
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DataReader

public DataReader()

Method Detail

supportedExtensions

public abstract java.util.List<java.lang.String> supportedExtensions()

DataReader plugins must override this to return a list of supported file extensions.

Returns:

a list of all lower case file extensions supported by this plugin

read

public DataType read(java.io.File file)
              throws java.io.IOException

Throws:

java.io.IOException

read

public DataType read(java.lang.String fileName)
              throws java.io.IOException

Throws:

java.io.IOException

read

public abstract DataType read(java.io.Reader reader)
                       throws java.io.IOException

Throws:

java.io.IOException

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object