Uses of Class
statalign.model.ext.ModelExtension

Packages that use ModelExtension

statalign.model.ext
statalign.model.ext.plugins
statalign.postprocess

Uses of ModelExtension in statalign.model.ext

Methods in statalign.model.ext that return types with arguments of type ModelExtension

java.util.List<ModelExtension>	ModelExtManager.getPluginList() Returns the (unmodifiable) list of recognised ModelExtension plugins.
java.util.List<ModelExtension>	ModelExtension.getPluginList() Returns the (unmodifiable) list of recognised ModelExtension plugins.

Methods in statalign.model.ext with parameters of type ModelExtension

void	ModelExtension.afterModExtParamChange(Tree tree, ModelExtension ext, boolean accepted) Called after a proposed model extension parameter change (accepted or rejected).
void	ModelExtension.beforeModExtParamChange(Tree tree, ModelExtension ext) Called when a model extension plugin is to propose a parameter change.
double	ModelExtension.logLikeModExtParamChange(Tree tree, ModelExtension ext) Computes the change in likelihood to this ModelExtension, after a change to ext.

Uses of ModelExtension in statalign.model.ext.plugins

Subclasses of ModelExtension in statalign.model.ext.plugins

class	PPFold
class	RNAAliFold
class	StructAlign

Methods in statalign.model.ext.plugins with parameters of type ModelExtension

double

StructAlign.logLikeModExtParamChange(Tree tree, ModelExtension ext)

Uses of ModelExtension in statalign.postprocess

Methods in statalign.postprocess that return types with arguments of type ModelExtension

java.util.List<ModelExtension>

Postprocess.getModExtPlugins()