statalign.model.ext.plugins.structalign
Class RotationOrTranslationMove

java.lang.Object
  statalign.mcmc.McmcMove
      statalign.model.ext.plugins.structalign.RotationOrTranslationMove

Direct Known Subclasses:

LibraryMove, RotationMove, TranslationMove

public abstract class RotationOrTranslationMove
extends McmcMove

Field Summary

StructAlignMoveParams

moveParams

Fields inherited from class statalign.mcmc.McmcMove

acceptAllDuringFirstHalfBurnin, acceptanceCount, autoTune, lastMoveAccepted, lowCounts, maxAcceptance, maxProposalWidthControlVariable, minAcceptance, moveProposed, name, proposalCount, proposalWidthControlVariable, spanMultiplier

Constructor Summary

RotationOrTranslationMove()

Method Summary

void	copyState(java.lang.Object externalState)
double	logPriorDensity(java.lang.Object externalState)
abstract double	proposal(java.lang.Object externalState)
void	restoreState(java.lang.Object externalState)
void	updateLikelihood(java.lang.Object externalState)

Methods inherited from class statalign.mcmc.McmcMove

acceptanceRate, afterFirstHalfBurnin, afterMove, getOwner, getParam, getTime, isParamChangeAccepted, move

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

moveParams

public StructAlignMoveParams moveParams

Constructor Detail

RotationOrTranslationMove

public RotationOrTranslationMove()

Method Detail

copyState

public void copyState(java.lang.Object externalState)

Specified by:

copyState in class McmcMove

proposal

public abstract double proposal(java.lang.Object externalState)

Specified by:

proposal in class McmcMove

logPriorDensity

public double logPriorDensity(java.lang.Object externalState)

Specified by:

logPriorDensity in class McmcMove

updateLikelihood

public void updateLikelihood(java.lang.Object externalState)

Specified by:

updateLikelihood in class McmcMove

restoreState

public void restoreState(java.lang.Object externalState)

Specified by:

restoreState in class McmcMove