statalign.model.score.plugins
Class DNAScore

java.lang.Object
  statalign.model.score.SubstitutionScore
      statalign.model.score.plugins.DNAScore

public class DNAScore
extends SubstitutionScore

This is an implementation of a DNA scoring.

Author:

miklos

Field Summary

Fields inherited from class statalign.model.score.SubstitutionScore

dist, which

Constructor Summary

DNAScore()
This constructor reads the distance matrix from data/dnadist.dat, and sets the which[][] array.

Method Summary

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DNAScore

public DNAScore()
         throws java.io.IOException,
                java.io.FileNotFoundException

This constructor reads the distance matrix from data/dnadist.dat, and sets the which[][] array.

Throws:

java.io.IOException

java.io.FileNotFoundException