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java.lang.Object statalign.model.subst.SubstitutionModel statalign.model.subst.plugins.AminoAcidModel statalign.model.subst.plugins.CpRev
public class CpRev
This class implements the Chloroplast reversible substitution model, see also http://www.ncbi.nlm.nih.gov/pubmed/10795826
Field Summary |
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Fields inherited from class statalign.model.subst.plugins.AminoAcidModel |
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type |
Fields inherited from class statalign.model.subst.SubstitutionModel |
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alphabet, attachedScoringScheme, d, e, params, v, w |
Constructor Summary | |
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CpRev()
Constructor used when instantiation is necessary. |
Method Summary |
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Methods inherited from class statalign.model.subst.plugins.AminoAcidModel |
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acceptable, getColor, mostLikely, print, restoreParameter, sampleParameter |
Methods inherited from class statalign.model.subst.SubstitutionModel |
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getMenuName, getMenuName, getPrior, getType, getType, updateSpan, updateTransitionMatrix |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public CpRev() throws java.io.IOException
java.io.IOException
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