Uses of Class
statalign.model.subst.plugins.NucleotideModel

Packages that use NucleotideModel

statalign.model.subst.plugins

Uses of NucleotideModel in statalign.model.subst.plugins

Subclasses of NucleotideModel in statalign.model.subst.plugins

class	Felsenstein81 This class implements the Felsenstein 1981 parameter model.
class	Felsenstein84 This class implements the Felsenstein 1984 parameter model.
class	HKY85 This class implements the HKY85 parameter model.
class	JukesCantor Implements the Jukes-Cantor model for nucleic acids.
class	Kimura3 Implements the Kimura 3 parameter model.
class	ReversibleNucleotide This class implements the general time reversible parameter model.
class	Tamura92 This class implements the Tamura 1992 model.
class	TamuraNei This class implements the Tamura-Nei parameter model.

Methods in statalign.model.subst.plugins with parameters of type NucleotideModel

static void

NucleotideModelUtils.numericalDiagonalisation(NucleotideModel M, double[][] Q) Class method for numerical diagonalisation of rate matrix Q for nucleotide model M.