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| Class Summary | |
|---|---|
| DisplayString | A class that stores the strings to be displayed and thus enable zooming on the consensus trees / networks |
| EntropyContainer | |
| LogLikelihoodTraceContainer | A container class that stores a loglikelihood value and a logical value if the sample comes from the burn-in period or not. |
| Mapping | |
| NewickParser | |
| RNAalifold | Given an alignment of sequence this class shells to the RNAalifold appropriately and returns a RNAalifold secondary structure prediction. |
| RNAFoldingTools | |
| Exception Summary | |
|---|---|
| NewickParserException | |
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