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Uses of Class
statalign.base.hmm.Hmm2

Packages that use Hmm2
statalign.base   
statalign.base.hmm   
 

Uses of Hmm2 in statalign.base
 

Fields in statalign.base declared as Hmm2
 Hmm2 Tree.hmm2
          When two fragments of two sequences on two neighbor vertices of the tree are realigned, the proposed new alignment is drawn from a forward-backward sampling of this HMM.
 

Uses of Hmm2 in statalign.base.hmm
 

Subclasses of Hmm2 in statalign.base.hmm
 class HmmTkf92
          This class implements a simplified version of the TKF92 pair-HMM.
 

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