Uses of Class
statalign.base.hmm.HmmSilent

Packages that use HmmSilent

statalign.base
statalign.base.hmm

Uses of HmmSilent in statalign.base

Fields in statalign.base declared as HmmSilent

HmmSilent

Tree.hmm3 When two fragments of two sequences on two sibling vertices are realigned drawing a novel ancestral substring for their parent vertex, the proposed new alignment is drawn from a forward-backward sampling of this HMM.

Uses of HmmSilent in statalign.base.hmm

Subclasses of HmmSilent in statalign.base.hmm

class

HmmNonParam An implementation of the abstract pair-HMM that emits characters into non-observable sequences Used when a new alignment is proposed that aligns together two substrings via an ancestral sequence.