Uses of Interface
statalign.io.DataType

Packages that use DataType

statalign.base
statalign.io
statalign.io.input
statalign.model.ext
statalign.model.ext.plugins

Uses of DataType in statalign.base

Classes in statalign.base that implement DataType

class

Tree This is the current tree in the MCMC run.

Fields in statalign.base with type parameters of type DataType

java.util.List<DataType>

InputData.auxData Non-sequence type auxiliary data that has been loaded, can be used by model extension plugins

Uses of DataType in statalign.io

Classes in statalign.io that implement DataType

class	ProteinSkeletons Represents simplified tertiary structures of a set of sequences (primarily proteins), only one 3d-coordinate per character (amino acid) is stored.
class	RawSequences Dynamic array of raw sequence data.

Methods in statalign.io that return DataType

DataType

DataManager.read(java.io.File file) Tries to read file using all available input plugins.

Uses of DataType in statalign.io.input

Methods in statalign.io.input that return DataType

DataType	DataReader.read(java.io.File file)
abstract DataType	DataReader.read(java.io.Reader reader)
DataType	DataReader.read(java.lang.String fileName)

Uses of DataType in statalign.model.ext

Methods in statalign.model.ext with parameters of type DataType

void	ModelExtManager.dataAdded(java.io.File file, DataType data) Called in GUI mode only when new data is added to the analysis.
void	ModelExtension.dataAdded(java.io.File file, DataType data)

Uses of DataType in statalign.model.ext.plugins

Methods in statalign.model.ext.plugins with parameters of type DataType

void	StructAlign.dataAdded(java.io.File file, DataType data)