statalign.postprocess
Class TreeVisualizer

java.lang.Object
  statalign.postprocess.Postprocess
      statalign.postprocess.TreeVisualizer

Direct Known Subclasses:

ConsensusTreeVisualizer, CurrentTreeVisualizer

public abstract class TreeVisualizer
extends Postprocess

Field Summary

Fields inherited from class statalign.postprocess.Postprocess

active, alignmentType, file, hasToolBar, mcmc, outputable, outputFile, postprocessable, postprocessWrite, rnaAssociated, sampling, screenable, selected, show

Method Summary

void	beforeFirstSample(InputData input) Called before MCMC start.
javax.swing.JPanel	getJPanel()
java.util.ArrayList<javax.swing.JComponent>	getToolBarItems() Returns the toolbar that this plugin uses.
void	init(TreeView[] views)
void	refreshGUI()
void	setSampling(boolean enabled) This function switches on or off the sampling mode.

Methods inherited from class statalign.postprocess.Postprocess

addTrack, afterLastSample, getDependences, getFileExtension, getIcon, getModExtPlugins, getTabName, getTabOrder, getTip, getTracks, init, newPeek, newSample, newSample, newStep, refToDependences, reloadPanel, setSelected

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

init

public void init(TreeView[] views)

beforeFirstSample

public void beforeFirstSample(InputData input)

Description copied from class: Postprocess

Called before MCMC start. This is the first time you can use PostprocessManager.mcmc to access internal data structure

Overrides:

beforeFirstSample in class Postprocess

getJPanel

public javax.swing.JPanel getJPanel()

Specified by:

getJPanel in class Postprocess

Returns:

Returns with the panel of the GUI

setSampling

public void setSampling(boolean enabled)

Description copied from class: Postprocess

This function switches on or off the sampling mode.

Specified by:

setSampling in class Postprocess

Parameters:

enabled - Set it true if you need samples.

getToolBarItems

public java.util.ArrayList<javax.swing.JComponent> getToolBarItems()

Description copied from class: Postprocess

Returns the toolbar that this plugin uses.

Overrides:

getToolBarItems in class Postprocess

refreshGUI

public void refreshGUI()