statalign.postprocess.gui
Class StructureDetails

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  fr.orsay.lri.varna.VARNAPanel
                      statalign.postprocess.gui.StructureDetails

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible

public class StructureDetails
extends fr.orsay.lri.varna.VARNAPanel

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

Fields inherited from class fr.orsay.lri.varna.VARNAPanel

_hoveredBase, VARNA_SESSION_EXTENSION

Fields inherited from class javax.swing.JComponent

TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

StructureDetails()

Method Summary

Methods inherited from class fr.orsay.lri.varna.VARNAPanel

addAnnotation, addHighlightRegion, addHighlightRegion, addHighlightRegion, addRNAListener, addSelectionListener, addToSelection, addToSelection, addVARNAListener, checkTranslation, clearSelection, drawBackbone, drawBBox, drawBorder, drawColorMap, drawRegionHighlightsAnnotation, drawRNA, drawRNA, drawRNA, drawRNA, drawRNA, drawRNA, drawRNA, drawRNAInterpolated, drawRNAInterpolated, drawRNAInterpolated, drawRNAInterpolated, drawRNAInterpolated, drawRNAInterpolated, drawRNAInterpolated, emitWarning, eraseSequence, errorDialog, errorDialog, errorDialogStatic, fireHoverChanged, fireLayoutChanged, fireLayoutChanged, fireSelectionChanged, fireSequenceChanged, fireStructureChanged, fireUINewStructure, get_selectedAnnotation, getBackboneColor, getBaseAt, getBasesInRectangle, getBasesInRectangleDiff, getBondColor, getBorderSize, getBPHeightIncrement, getBPStyle, getColorGapsBases, getColorMap, getColorMapCaption, getColorMapVisible, getColorSpecialBases, getConfig, getDrawBackbone, getDrawMode, getExtendedRNABBox, getFlatExteriorLoop, getGapsBasesColor, getInnerHeight, getInnerWidth, getLastSelectedPosition, getLeftOffset, getListeAnnotations, getNearestBase, getNonStandardBasesColor, getNumPeriod, getOffsetPanel, getOrientation, getPopup, getPopupMenu, getRealCoords, getRNA, getRNAOffset, getScaleFactor, getSelection, getSelectionIndices, getShowNonCanonicalBP, getShowNonPlanarBP, getShowWarnings, getTitle, getTitleColor, getTitleFont, getTopOffset, getTranslation, getUseBaseColorsForBPs, getVARNAUI, getZoom, getZoomIncrement, globalRotation, highlightSelectedAnnotation, highlightSelectedBase, highlightSelectedStem, importSession, importSession, isAutoCentered, isComparisonMode, isErrorsOn, isInSelection, isInterpolationInProgress, isModifiable, isOutOfFrame, loadFile, loadFile, loadSession, lockScrolling, logicToPanel, paintComponent, paintComponent, panelToLogicPoint, readValues, redo, removeAnnotation, removeColorMap, removeFromSelection, removeHighlightRegion, removeLink, removeSelectedAnnotation, removeSelectionRectangle, renderComponent, reset, resetAnnotationHighlight, resetListeAnnotations, restoreSelection, saveSelection, saveSession, set_selectedAnnotation, setAutoCenter, setBackboneColor, setBackground, setBaseFontSize, setBaseFontStyle, setBaseInnerColor, setBaseNameColor, setBaseNumbersColor, setBaseOutlineColor, setBondColor, setBorderSize, setBPHeightIncrement, setBPStyle, setColorGapsBases, setColorMap, setColorMapCaption, setColorMapMaxValue, setColorMapMinValue, setColorMapValues, setColorMapVisible, setColorNonStandardBases, setConfig, setDefaultBPColor, setDestinationLink, setDrawBackbone, setErrorsOn, setFlatExteriorLoop, setGapsBasesColor, setHoverBase, setLastSelectedPosition, setModifiable, setNearestBase, setNonStandardBasesColor, setNumbersFontSize, setNumPeriod, setOriginLink, setRealCoords, setScaleFactor, setSelection, setSelection, setSelectionRectangle, setSequence, setShowNonCanonicalBP, setShowNonPlanarBP, setShowWarnings, setTitle, setTitleColor, setTitleFont, setTitleFontColor, setTitleFontFamily, setTitleFontSize, setTitleFontStyle, setTranslation, setUseBaseColorsForBPs, setZoom, setZoomIncrement, setZoomIncrement, showRNA, showRNA, showRNAInterpolated, showRNAInterpolated, showRNAInterpolated, toggleDrawOutlineBase, toggleFillBase, toggleSelection, toggleSelection, transformCoord, transformCoord, undo, unlockScrolling

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

StructureDetails

public StructureDetails()
                 throws fr.orsay.lri.varna.exceptions.ExceptionNonEqualLength

Throws:

fr.orsay.lri.varna.exceptions.ExceptionNonEqualLength