Uses of Class
statalign.postprocess.plugins.TreeNode

Packages that use TreeNode

statalign.postprocess.gui.treeviews
statalign.postprocess.plugins
statalign.postprocess.plugins.contree
statalign.postprocess.plugins.contree.test
statalign.postprocess.utils

Uses of TreeNode in statalign.postprocess.gui.treeviews

Methods in statalign.postprocess.gui.treeviews with parameters of type TreeNode

void	TreeView.newSample(TreeNode root)
void	NetworkTreeView.newSample(TreeNode root)
void	HorizontalPhylogramTreeView.newSample(TreeNode root)
void	HorizontalCladogramTreeView.newSample(TreeNode root)

Uses of TreeNode in statalign.postprocess.plugins

Fields in statalign.postprocess.plugins declared as TreeNode

TreeNode

TreeNode.parent The parent of this node.

Fields in statalign.postprocess.plugins with type parameters of type TreeNode

java.util.List<TreeNode>

TreeNode.children The children of this node.

Methods in statalign.postprocess.plugins that return TreeNode

TreeNode	TreeNode.getLeft() TODO: WHAT?
TreeNode	TreeNode.getRight()

Methods in statalign.postprocess.plugins that return types with arguments of type TreeNode

java.util.List<TreeNode>	TreeNode.getLeaves() Finds all of the leaves of the subtree of this node.
java.util.List<TreeNode>	TreeNode.getLeaves(TreeNode node) Same as getLeaves().

Methods in statalign.postprocess.plugins with parameters of type TreeNode

void	TreeNode.addChild(TreeNode node) Adds a child to this tree's list of children.
java.util.List<TreeNode>	TreeNode.getLeaves(TreeNode node) Same as getLeaves().

Uses of TreeNode in statalign.postprocess.plugins.contree

Fields in statalign.postprocess.plugins.contree with type parameters of type TreeNode

java.util.ArrayList<TreeNode>

CTree.nodeList

Methods in statalign.postprocess.plugins.contree that return TreeNode

TreeNode

CTree.getRoot()

Methods in statalign.postprocess.plugins.contree with parameters of type TreeNode

void	CTMain.addNewTree(TreeNode root) Add a new tree to the hash table
void	CTMain.initialize(TreeNode root, int noOfSamples) Initialise a CTMain before usage with a first tree, going through and setting up the hash table etc.

Method parameters in statalign.postprocess.plugins.contree with type arguments of type TreeNode

int	Cluster.compareTo(java.util.ArrayList<TreeNode> other)

Uses of TreeNode in statalign.postprocess.plugins.contree.test

Methods in statalign.postprocess.plugins.contree.test with parameters of type TreeNode

void	CorrectnessTester.markDepth(TreeNode node, int depth)

Uses of TreeNode in statalign.postprocess.utils

Methods in statalign.postprocess.utils that return TreeNode

TreeNode

NewickParser.parse()