Uses of Class
statalign.postprocess.plugins.contree.CNetworkNode

Packages that use CNetworkNode

statalign.postprocess.plugins.contree

Uses of CNetworkNode in statalign.postprocess.plugins.contree

Fields in statalign.postprocess.plugins.contree declared as CNetworkNode

CNetworkNode	CNetworkNode.CopiedToNode
CNetworkNode	CNetworkEdge.networkNodeA
CNetworkNode	CNetworkEdge.networkNodeB

Fields in statalign.postprocess.plugins.contree with type parameters of type CNetworkNode

java.util.ArrayList<CNetworkNode>	CNetwork.nodes
java.util.ArrayList<CNetworkNode>	CNetworkPath.pathOfNodes

Methods in statalign.postprocess.plugins.contree that return CNetworkNode

CNetworkNode	CNetworkPath.endNode() Returns the node at the end of the path
CNetworkNode	CNetworkNode.findFirstNonSubset(CNetworkSplit addSplit, java.util.ArrayList<CNetworkNode> consideredNodes, boolean zeroSide, int noOfTaxa) Recursive function used to find node at which we can add a split compatible with the network Goes up from first node and finds where edges joining are no longer subset of specified side of split we want to add
CNetworkNode	CNetworkPath.startNode() Returns the node at the start of the path
CNetworkNode	CTMain.TaxonRefToNode(int taxonRef, CNetwork network) Find the taxon node in the network.

Methods in statalign.postprocess.plugins.contree that return types with arguments of type CNetworkNode

java.util.ArrayList<CNetworkNode>

CNetworkNode.DrawEdges(int noOfTaxa) Function to draw the network i.e. find x and y co-ordinates for nodes.

Methods in statalign.postprocess.plugins.contree with parameters of type CNetworkNode

CNetworkPath

CNetworkPath.combineWith(CNetworkPath toAdd, CNetworkNode nodeToLinkOver) Combines this path with the argument path across the argument node

Method parameters in statalign.postprocess.plugins.contree with type arguments of type CNetworkNode

void	CNetworkNode.AddToPaths(CNetworkPath pathToAdd, java.util.ArrayList<CNetworkNode> nodesToClearUp) Add a path to the node path list..
void	CTMain.CopyNode(java.util.ArrayList<CNetworkNode> nodesToCopy, CNetworkSplit splitToAdd, CNetwork network, java.util.ArrayList<CNetworkEdge> incompatibleEdges) Copy the list of nodes that need copying when adding a new split into a network.
CNetworkNode	CNetworkNode.findFirstNonSubset(CNetworkSplit addSplit, java.util.ArrayList<CNetworkNode> consideredNodes, boolean zeroSide, int noOfTaxa) Recursive function used to find node at which we can add a split compatible with the network Goes up from first node and finds where edges joining are no longer subset of specified side of split we want to add