statalign.ui
Class MainFrame

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Window
              java.awt.Frame
                  javax.swing.JFrame
                      statalign.ui.MainFrame

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants

public class MainFrame
extends javax.swing.JFrame
implements java.awt.event.ActionListener

The main frame of the program. Created by statalign.StatAlign when run in graphical mode.

Author:

miklos, novak

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.BaselineResizeBehavior

Field Summary

static java.lang.String	DEV_MANUAL
static java.lang.String	IDLE_STATUS_MESSAGE
static java.lang.String	JAVADOCS
MainManager	manager The main manager that handles the MCMC run.
javax.swing.JToggleButton	rnaButton
javax.swing.JLabel	statusText
javax.swing.JToolBar	toolBar
static java.lang.String	USER_MANUAL
static java.lang.String	WELCOME_MSG

Fields inherited from class javax.swing.JFrame

EXIT_ON_CLOSE

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants

DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

MainFrame()
The only constructor of the class.

Method Summary

void	actionPerformed(java.awt.event.ActionEvent ev) An ActioListener is implemented, so we have to implement this function.
void	addSequences()
void	browseManual(java.lang.String path, java.lang.String description)
void	checkForUpdates()
boolean	checkPage()
void	deactivateRNA()
void	disableAllButtons()
void	finished(int errorCode, java.lang.Exception ex) Enables several menu items that were kept disabled during the run.
void	helpDevs()
void	helpJavadocs()
void	helpUsers()
static void	main(java.lang.String[] args) Merely for testing purposes.
void	start()
void	updateTabs()

Methods inherited from class javax.swing.JFrame

getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setTransferHandler, update

Methods inherited from class java.awt.Frame

addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, paint, postEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, dispatchEvent, enable, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

IDLE_STATUS_MESSAGE

public static final java.lang.String IDLE_STATUS_MESSAGE

See Also:

Constant Field Values

WELCOME_MSG

public static final java.lang.String WELCOME_MSG

See Also:

Constant Field Values

USER_MANUAL

public static final java.lang.String USER_MANUAL

See Also:

Constant Field Values

DEV_MANUAL

public static final java.lang.String DEV_MANUAL

See Also:

Constant Field Values

JAVADOCS

public static final java.lang.String JAVADOCS

See Also:

Constant Field Values

toolBar

public javax.swing.JToolBar toolBar

rnaButton

public javax.swing.JToggleButton rnaButton

statusText

public javax.swing.JLabel statusText

manager

public MainManager manager

The main manager that handles the MCMC run.

Constructor Detail

MainFrame

public MainFrame()
          throws java.lang.Exception

The only constructor of the class. It launches the main window.

Throws:

java.lang.Exception

Method Detail

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent ev)

An ActioListener is implemented, so we have to implement this function. It handles actions on the menu bar.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

addSequences

public void addSequences()

checkPage

public boolean checkPage()

checkForUpdates

public void checkForUpdates()

browseManual

public void browseManual(java.lang.String path,
                         java.lang.String description)

helpUsers

public void helpUsers()

helpDevs

public void helpDevs()

helpJavadocs

public void helpJavadocs()

finished

public void finished(int errorCode,
                     java.lang.Exception ex)

Enables several menu items that were kept disabled during the run.

Parameters:

errorCode - -1: error 0: completed 1: stopped after sampling 2: stopped before sampling

ex - the exception that was thrown when errorCode = -1

deactivateRNA

public void deactivateRNA()

disableAllButtons

public void disableAllButtons()

start

public void start()

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Merely for testing purposes.

Parameters:

args - No argument is used.

Throws:

java.lang.Exception

updateTabs

public void updateTabs()