Uses of Package
statalign.base.hmm

Packages that use statalign.base.hmm

statalign.base
statalign.base.hmm
statalign.model.ext
statalign.model.ext.plugins

Classes in statalign.base.hmm used by statalign.base

Hmm2
This is an abstract class for HMMs that are pair-HMMs and do not emit characters into unobservable sequences.

HmmSilent
This is the abstract class of pair-HMMs that emit characters into one unobservable sequence, namely that aligns two observable sequences via an unobservable ancestral sequence.

Classes in statalign.base.hmm used by statalign.base.hmm

Hmm
The abstract class of Hidden Markov Models.

Hmm2
This is an abstract class for HMMs that are pair-HMMs and do not emit characters into unobservable sequences.

HmmSilent
This is the abstract class of pair-HMMs that emit characters into one unobservable sequence, namely that aligns two observable sequences via an unobservable ancestral sequence.

Classes in statalign.base.hmm used by statalign.model.ext

Hmm
The abstract class of Hidden Markov Models.

Classes in statalign.base.hmm used by statalign.model.ext.plugins

Hmm
The abstract class of Hidden Markov Models.