statalign.base.mcmc
Class TopologyMove

java.lang.Object
  statalign.mcmc.McmcMove
      statalign.base.mcmc.TopologyMove

public class TopologyMove
extends McmcMove

Field Summary

int	topologyChangeAcceptanceCount

Fields inherited from class statalign.mcmc.McmcMove

acceptAllDuringFirstHalfBurnin, acceptanceCount, autoTune, lastMoveAccepted, lowCounts, maxAcceptance, maxProposalWidthControlVariable, minAcceptance, moveProposed, name, proposalCount, proposalWidthControlVariable, spanMultiplier

Constructor Summary

TopologyMove(McmcModule m, PriorDistribution<java.lang.Double> pr, double propVar, double _fastSwapProb, java.lang.String n)

Method Summary

void	afterMove(java.lang.Object externalState)
void	copyState(java.lang.Object externalState)
double	logPriorDensity(java.lang.Object externalState)
double	proposal(java.lang.Object externalState)
void	restoreState(java.lang.Object externalState)
void	updateLikelihood(java.lang.Object externalState)

Methods inherited from class statalign.mcmc.McmcMove

acceptanceRate, afterFirstHalfBurnin, getOwner, getParam, getTime, isParamChangeAccepted, move

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

topologyChangeAcceptanceCount

public int topologyChangeAcceptanceCount

Constructor Detail

TopologyMove

public TopologyMove(McmcModule m,
                    PriorDistribution<java.lang.Double> pr,
                    double propVar,
                    double _fastSwapProb,
                    java.lang.String n)

Method Detail

copyState

public void copyState(java.lang.Object externalState)

Specified by:

copyState in class McmcMove

proposal

public double proposal(java.lang.Object externalState)

Specified by:

proposal in class McmcMove

logPriorDensity

public double logPriorDensity(java.lang.Object externalState)

Specified by:

logPriorDensity in class McmcMove

updateLikelihood

public void updateLikelihood(java.lang.Object externalState)

Specified by:

updateLikelihood in class McmcMove

restoreState

public void restoreState(java.lang.Object externalState)

Specified by:

restoreState in class McmcMove

afterMove

public void afterMove(java.lang.Object externalState)

Overrides:

afterMove in class McmcMove