Uses of Class
statalign.model.score.SubstitutionScore

Packages that use SubstitutionScore

statalign.model.score.plugins
statalign.model.subst

Uses of SubstitutionScore in statalign.model.score.plugins

Subclasses of SubstitutionScore in statalign.model.score.plugins

class	Blosum62 An implementation of the BLOSUM62 distances This is the distance and not the similarity matrix!!!
class	DNAScore This is an implementation of a DNA scoring.

Uses of SubstitutionScore in statalign.model.subst

Fields in statalign.model.subst declared as SubstitutionScore

SubstitutionScore

SubstitutionModel.attachedScoringScheme This scoring scheme is used for constructing an initial tree.