Uses of Class
statalign.postprocess.Postprocess

Packages that use Postprocess

statalign.base
statalign.postprocess
statalign.postprocess.gui
statalign.postprocess.plugins
statalign.postprocess.plugins.structalign

Uses of Postprocess in statalign.base

Subclasses of Postprocess in statalign.base

class

Input This class is an extension of the Postprocess class and is for showing the actual input sequences.

Uses of Postprocess in statalign.postprocess

Subclasses of Postprocess in statalign.postprocess

class

TreeVisualizer

Methods in statalign.postprocess that return types with arguments of type Postprocess

java.util.List<Postprocess>

PostprocessManager.getPlugins()

Methods in statalign.postprocess with parameters of type Postprocess

void	Postprocess.refToDependences(Postprocess[] plugins) Override this to get access to instances of the plugins your plugin depends on.

Uses of Postprocess in statalign.postprocess.gui

Constructors in statalign.postprocess.gui with parameters of type Postprocess

AlignmentGUI(java.lang.String title, SubstitutionModel subst, Postprocess _owner)
It initializes a new panel for alignments.

Uses of Postprocess in statalign.postprocess.plugins

Subclasses of Postprocess in statalign.postprocess.plugins

class	ConsensusNetwork This is the postprocessmanager for showing the consensus network.
class	ConsensusTreeVisualizer
class	CurrentAlignment This is the postprocessmanager for showing the current alignment.
class	CurrentTreeVisualizer
class	Entropy This is the implementation of the postprocess that handles entropy.
class	LogLikelihoodTrace This is the implementation of the postprocess that handles loglikelihoods.
class	MpdAlignment
class	PPFold
class	Structure
class	VisualDistance

Methods in statalign.postprocess.plugins with parameters of type Postprocess

void	VisualDistance.refToDependences(Postprocess[] plugins)
void	Structure.refToDependences(Postprocess[] plugins)
void	PPFold.refToDependences(Postprocess[] plugins)
void	MpdAlignment.refToDependences(Postprocess[] plugins)
void	Entropy.refToDependences(Postprocess[] plugins)

Uses of Postprocess in statalign.postprocess.plugins.structalign

Subclasses of Postprocess in statalign.postprocess.plugins.structalign

class	RmsdTrace
class	StructTrace

Methods in statalign.postprocess.plugins.structalign with parameters of type Postprocess

void	RmsdTrace.refToDependences(Postprocess[] plugins)