statalign.mcmc
Class ContinuousPositiveParameterMove

java.lang.Object
  statalign.mcmc.McmcMove
      statalign.mcmc.ContinuousPositiveParameterMove

Direct Known Subclasses:

AllEdgeMove, ContinuousPositiveStructAlignMove, EdgeMove, IndelMove

public abstract class ContinuousPositiveParameterMove
extends McmcMove

Field Summary

Fields inherited from class statalign.mcmc.McmcMove

acceptAllDuringFirstHalfBurnin, acceptanceCount, autoTune, lastMoveAccepted, lowCounts, maxAcceptance, maxProposalWidthControlVariable, minAcceptance, moveProposed, name, proposalCount, proposalWidthControlVariable, spanMultiplier

Constructor Summary

ContinuousPositiveParameterMove(McmcModule m, ParameterInterface p, PriorDistribution<java.lang.Double> pr, ProposalDistribution<java.lang.Double> prop, java.lang.String n)

Method Summary

void	copyState(java.lang.Object externalState)
double	logPriorDensity(java.lang.Object externalState)
double	proposal(java.lang.Object externalState)
void	restoreState(java.lang.Object externalState)
void	setMaxValue(double x)
void	setMinValue(double x)
abstract void	updateLikelihood(java.lang.Object externalState)
void	updateProposal(double proposalWidthControlVariable, java.lang.Double currentParam)

Methods inherited from class statalign.mcmc.McmcMove

acceptanceRate, afterFirstHalfBurnin, afterMove, getOwner, getParam, getTime, isParamChangeAccepted, move

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ContinuousPositiveParameterMove

public ContinuousPositiveParameterMove(McmcModule m,
                                       ParameterInterface p,
                                       PriorDistribution<java.lang.Double> pr,
                                       ProposalDistribution<java.lang.Double> prop,
                                       java.lang.String n)

Method Detail

setMinValue

public void setMinValue(double x)

setMaxValue

public void setMaxValue(double x)

copyState

public void copyState(java.lang.Object externalState)

Specified by:

copyState in class McmcMove

proposal

public double proposal(java.lang.Object externalState)

Specified by:

proposal in class McmcMove

logPriorDensity

public double logPriorDensity(java.lang.Object externalState)

Specified by:

logPriorDensity in class McmcMove

updateLikelihood

public abstract void updateLikelihood(java.lang.Object externalState)

Specified by:

updateLikelihood in class McmcMove

restoreState

public void restoreState(java.lang.Object externalState)

Specified by:

restoreState in class McmcMove

updateProposal

public void updateProposal(double proposalWidthControlVariable,
                           java.lang.Double currentParam)