statalign.model.ext.plugins.structalign
Class ContinuousPositiveStructAlignMove

java.lang.Object
  statalign.mcmc.McmcMove
      statalign.mcmc.ContinuousPositiveParameterMove
          statalign.model.ext.plugins.structalign.ContinuousPositiveStructAlignMove

Direct Known Subclasses:

HierarchicalContinuousPositiveStructAlignMove

public class ContinuousPositiveStructAlignMove
extends ContinuousPositiveParameterMove

Field Summary

StructAlignMoveParams

moveParams

Fields inherited from class statalign.mcmc.McmcMove

acceptAllDuringFirstHalfBurnin, acceptanceCount, autoTune, lastMoveAccepted, lowCounts, maxAcceptance, maxProposalWidthControlVariable, minAcceptance, moveProposed, name, proposalCount, proposalWidthControlVariable, spanMultiplier

Constructor Summary

ContinuousPositiveStructAlignMove(StructAlign s, ParameterInterface p, PriorDistribution<java.lang.Double> pr, ProposalDistribution<java.lang.Double> prop, java.lang.String n)

Method Summary

void	addParent(HierarchicalContinuousPositiveStructAlignMove p)
void	afterMove(java.lang.Object externalState)
void	copyState(java.lang.Object externalState)
double	logPriorDensity(java.lang.Object externalState)
double	proposal(java.lang.Object externalState)
void	restoreState(java.lang.Object externalState)
void	setParam(double x)
void	updateLikelihood(java.lang.Object externalState)

Methods inherited from class statalign.mcmc.ContinuousPositiveParameterMove

setMaxValue, setMinValue, updateProposal

Methods inherited from class statalign.mcmc.McmcMove

acceptanceRate, afterFirstHalfBurnin, getOwner, getParam, getTime, isParamChangeAccepted, move

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

moveParams

public StructAlignMoveParams moveParams

Constructor Detail

ContinuousPositiveStructAlignMove

public ContinuousPositiveStructAlignMove(StructAlign s,
                                         ParameterInterface p,
                                         PriorDistribution<java.lang.Double> pr,
                                         ProposalDistribution<java.lang.Double> prop,
                                         java.lang.String n)

Method Detail

addParent

public void addParent(HierarchicalContinuousPositiveStructAlignMove p)

copyState

public void copyState(java.lang.Object externalState)

Overrides:

copyState in class ContinuousPositiveParameterMove

proposal

public double proposal(java.lang.Object externalState)

Overrides:

proposal in class ContinuousPositiveParameterMove

logPriorDensity

public double logPriorDensity(java.lang.Object externalState)

Overrides:

logPriorDensity in class ContinuousPositiveParameterMove

updateLikelihood

public void updateLikelihood(java.lang.Object externalState)

Specified by:

updateLikelihood in class ContinuousPositiveParameterMove

restoreState

public void restoreState(java.lang.Object externalState)

Overrides:

restoreState in class ContinuousPositiveParameterMove

setParam

public void setParam(double x)

afterMove

public void afterMove(java.lang.Object externalState)

Overrides:

afterMove in class McmcMove