Uses of Class
statalign.model.ext.ModelExtManager

Packages that use ModelExtManager

statalign.base
statalign.base.mcmc
statalign.model.ext
statalign.postprocess
statalign.postprocess.plugins
statalign.postprocess.plugins.structalign

Uses of ModelExtManager in statalign.base

Fields in statalign.base declared as ModelExtManager

ModelExtManager	Mcmc.modelExtMan Manager that handles model extension plugins
ModelExtManager	MainManager.modelExtMan Manager for model extension plugins

Constructors in statalign.base with parameters of type ModelExtManager

Mcmc(Tree tree, MCMCPars pars, PostprocessManager ppm, ModelExtManager modelExtMan)

Mcmc(Tree tree, MCMCPars pars, PostprocessManager ppm, ModelExtManager modelExtMan, int noOfProcesses, int rank, double heat)

Uses of ModelExtManager in statalign.base.mcmc

Methods in statalign.base.mcmc that return ModelExtManager

ModelExtManager

CoreMcmcModule.getModelExtMan()

Constructors in statalign.base.mcmc with parameters of type ModelExtManager

CoreMcmcModule(Mcmc mc, ModelExtManager m)

Uses of ModelExtManager in statalign.model.ext

Methods in statalign.model.ext with parameters of type ModelExtManager

void	ModelExtension.setManager(ModelExtManager manager)

Uses of ModelExtManager in statalign.postprocess

Methods in statalign.postprocess with parameters of type ModelExtManager

void	PostprocessManager.init(ModelExtManager modelExtMan)
void	Postprocess.init(ModelExtManager modelExtMan) Called by PostprocessManager after setting the Postprocess.show field to allow initialisation, possibly involving GUI (toolbar etc.)

Uses of ModelExtManager in statalign.postprocess.plugins

Methods in statalign.postprocess.plugins with parameters of type ModelExtManager

void	Structure.init(ModelExtManager manager)
void	CurrentTreeVisualizer.init(ModelExtManager manager)
void	ConsensusTreeVisualizer.init(ModelExtManager manager)

Uses of ModelExtManager in statalign.postprocess.plugins.structalign

Methods in statalign.postprocess.plugins.structalign with parameters of type ModelExtManager

void	StructTrace.init(ModelExtManager modelExtMan)
void	RmsdTrace.init(ModelExtManager modelExtMan)