statalign.model.ext.plugins.structalign
Class HierarchicalContinuousPositiveStructAlignMove

java.lang.Object
  statalign.mcmc.McmcMove
      statalign.mcmc.ContinuousPositiveParameterMove
          statalign.model.ext.plugins.structalign.ContinuousPositiveStructAlignMove
              statalign.model.ext.plugins.structalign.HierarchicalContinuousPositiveStructAlignMove

public class HierarchicalContinuousPositiveStructAlignMove
extends ContinuousPositiveStructAlignMove

Field Summary

PriorDistribution<java.lang.Double>

hierarchicalPrior

Fields inherited from class statalign.model.ext.plugins.structalign.ContinuousPositiveStructAlignMove

moveParams

Fields inherited from class statalign.mcmc.McmcMove

acceptAllDuringFirstHalfBurnin, acceptanceCount, autoTune, lastMoveAccepted, lowCounts, maxAcceptance, maxProposalWidthControlVariable, minAcceptance, moveProposed, name, proposalCount, proposalWidthControlVariable, spanMultiplier

Constructor Summary

HierarchicalContinuousPositiveStructAlignMove(StructAlign s, ParameterInterface p, PriorDistribution<java.lang.Double> pr, ProposalDistribution<java.lang.Double> prop, java.lang.String n)

Method Summary

void	addChildMove(ContinuousPositiveStructAlignMove child)
void	allowSpikeSelection()
void	disallowSpikeSelection()
double	getLogChildDensity(ContinuousPositiveStructAlignMove child)
double	proposal(java.lang.Object externalState)
void	restoreState(java.lang.Object externalState)
void	setSpikeParams(double[] params)

Methods inherited from class statalign.model.ext.plugins.structalign.ContinuousPositiveStructAlignMove

addParent, afterMove, copyState, logPriorDensity, setParam, updateLikelihood

Methods inherited from class statalign.mcmc.ContinuousPositiveParameterMove

setMaxValue, setMinValue, updateProposal

Methods inherited from class statalign.mcmc.McmcMove

acceptanceRate, afterFirstHalfBurnin, getOwner, getParam, getTime, isParamChangeAccepted, move

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

hierarchicalPrior

public PriorDistribution<java.lang.Double> hierarchicalPrior

Constructor Detail

HierarchicalContinuousPositiveStructAlignMove

public HierarchicalContinuousPositiveStructAlignMove(StructAlign s,
                                                     ParameterInterface p,
                                                     PriorDistribution<java.lang.Double> pr,
                                                     ProposalDistribution<java.lang.Double> prop,
                                                     java.lang.String n)

Method Detail

disallowSpikeSelection

public void disallowSpikeSelection()

allowSpikeSelection

public void allowSpikeSelection()

addChildMove

public void addChildMove(ContinuousPositiveStructAlignMove child)

getLogChildDensity

public double getLogChildDensity(ContinuousPositiveStructAlignMove child)

setSpikeParams

public void setSpikeParams(double[] params)

proposal

public double proposal(java.lang.Object externalState)

Overrides:

proposal in class ContinuousPositiveStructAlignMove

restoreState

public void restoreState(java.lang.Object externalState)

Overrides:

restoreState in class ContinuousPositiveStructAlignMove