Uses of Class
statalign.postprocess.plugins.contree.CNetwork

Packages that use CNetwork

statalign.base
statalign.postprocess.gui
statalign.postprocess.plugins.contree

Uses of CNetwork in statalign.base

Fields in statalign.base declared as CNetwork

CNetwork	Tree.network
CNetwork	Mcmc.network

Uses of CNetwork in statalign.postprocess.gui

Fields in statalign.postprocess.gui declared as CNetwork

CNetwork

CNetworkView.network

Uses of CNetwork in statalign.postprocess.plugins.contree

Methods in statalign.postprocess.plugins.contree that return CNetwork

CNetwork

CTMain.constructNetwork(CTree tree) Constructs the network beginning with the consensus tree and then calls the network drawing function to calculate positions

Methods in statalign.postprocess.plugins.contree with parameters of type CNetwork

void	CTMain.CopyNode(java.util.ArrayList<CNetworkNode> nodesToCopy, CNetworkSplit splitToAdd, CNetwork network, java.util.ArrayList<CNetworkEdge> incompatibleEdges) Copy the list of nodes that need copying when adding a new split into a network.
void	CTMain.printDetails(CTree tree, CNetwork network) FOR TESTING ONLY Print details from the network - call after it has been constructed!
CNetworkNode	CTMain.TaxonRefToNode(int taxonRef, CNetwork network) Find the taxon node in the network.